Detailed information of SNP:
|
SNP ID:
sf0131492802(Gbrowse)
Chromosome: chr01 Position: 31492802 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 79.07% | 20.93% |
| All Indica | 799 | 66.21% | 33.79% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 375 | 41.60% | 58.40% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 75.83% | 24.17% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0131492802 | T->C | INTERGENIC | None |