Detailed information of SNP:
|
SNP ID:
sf0131502716(Gbrowse)
Chromosome: chr01 Position: 31502716 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 89.56% | 10.44% |
| All Indica | 788 | 88.20% | 11.80% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 367 | 95.37% | 4.63% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 208 | 71.15% | 28.85% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0131502716 | G->A | INTERGENIC | None |