Detailed information of SNP:
|
SNP ID:
sf0131503908(Gbrowse)
Chromosome: chr01 Position: 31503908 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1315 | 51.41% | 48.59% |
| All Indica | 703 | 34.85% | 65.15% |
| All Japonica | 493 | 79.31% | 20.69% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 342 | 23.98% | 76.02% |
| Indica II | 167 | 60.48% | 39.52% |
| Indica Intermediate | 194 | 31.96% | 68.04% |
| Temperate Japonica | 335 | 80.60% | 19.40% |
| Tropical Japonica | 93 | 89.25% | 10.75% |
| Japonica Intermediate | 65 | 58.46% | 41.54% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 60.53% | 39.47% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0131503908 | T->C | LOC_Os01g54760(LOC_Os01g54760.1) | INTRON |