Detailed information of SNP:
|
SNP ID:
sf0131504249(Gbrowse)
Chromosome: chr01 Position: 31504249 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1308 | 80.73% | 19.27% |
| All Indica | 720 | 68.47% | 31.53% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 38 | 68.42% | 31.58% |
| Indica I | 331 | 46.83% | 53.17% |
| Indica II | 207 | 99.52% | 0.48% |
| Indica Intermediate | 182 | 72.53% | 27.47% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 84.62% | 15.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0131504249 | C->T | LOC_Os01g54760(LOC_Os01g54760.1) | INTRON |