Detailed information of SNP:
|
SNP ID:
sf0131504509(Gbrowse)
Chromosome: chr01 Position: 31504509 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 65.60% | 34.40% |
| All Indica | 790 | 92.03% | 7.97% |
| All Japonica | 497 | 22.94% | 77.06% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 373 | 90.88% | 9.12% |
| Indica II | 210 | 96.67% | 3.33% |
| Indica Intermediate | 207 | 89.37% | 10.63% |
| Temperate Japonica | 335 | 20.60% | 79.40% |
| Tropical Japonica | 94 | 13.83% | 86.17% |
| Japonica Intermediate | 68 | 47.06% | 52.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0131504509 | T->C | LOC_Os01g54760(LOC_Os01g54760.1) | INTRON |