Detailed information of SNP:
|
SNP ID:
sf0131504988(Gbrowse)
Chromosome: chr01 Position: 31504988 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1406 | 70.91% | 29.09% |
| All Indica | 787 | 57.94% | 42.06% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 66 | 4.55% | 95.45% |
| Indica I | 368 | 41.30% | 58.70% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 206 | 50.97% | 49.03% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0131504988 | G->T | LOC_Os01g54760(LOC_Os01g54760.1) | Synonymous |