Detailed information of SNP:
|
SNP ID:
sf0131529718(Gbrowse)
Chromosome: chr01 Position: 31529718 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 83.51% | 16.49% |
| All Indica | 793 | 72.38% | 27.62% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 370 | 47.84% | 52.16% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 87.62% | 12.38% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0131529718 | C->T | LOC_Os01g54820(LOC_Os01g54820.1) | Non-Synonymous SNP |