Detailed information of SNP:
|
SNP ID:
sf0131534694(Gbrowse)
Chromosome: chr01 Position: 31534694 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 70.96% | 29.04% |
| All Indica | 793 | 49.68% | 50.32% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 66.31% | 33.69% |
| Indica II | 210 | 11.90% | 88.10% |
| Indica Intermediate | 209 | 57.89% | 42.11% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0131534694 | G->A | LOC_Os01g54830(LOC_Os01g54830.1) | Non-Synonymous SNP |