Detailed information of SNP:
|
SNP ID:
sf0131563250(Gbrowse)
Chromosome: chr01 Position: 31563250 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 64.22% | 35.78% |
| All Indica | 797 | 95.48% | 4.52% |
| All Japonica | 497 | 12.68% | 87.32% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 95.47% | 4.53% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 209 | 93.78% | 6.22% |
| Temperate Japonica | 335 | 15.22% | 84.78% |
| Tropical Japonica | 94 | 10.64% | 89.36% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0131563250 | T->G | INTERGENIC | None |