Detailed information of SNP:
|
SNP ID:
sf0131566102(Gbrowse)
Chromosome: chr01 Position: 31566102 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 76.53% | 23.47% |
| All Indica | 799 | 68.71% | 31.29% |
| All Japonica | 497 | 87.12% | 12.88% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 375 | 44.53% | 55.47% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 80.09% | 19.91% |
| Temperate Japonica | 335 | 94.63% | 5.37% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 51.47% | 48.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0131566102 | G->A | INTERGENIC | None |