Detailed information of SNP:
|
SNP ID:
sf0131624770(Gbrowse)
Chromosome: chr01 Position: 31624770 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 73.31% | 26.69% |
| All Indica | 796 | 55.03% | 44.97% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 374 | 38.77% | 61.23% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 209 | 44.50% | 55.50% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0131624770 | G->A | INTERGENIC | None |