Detailed information of SNP:
|
SNP ID:
sf0131626791(Gbrowse)
Chromosome: chr01 Position: 31626791 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 68.95% | 31.05% |
| All Indica | 797 | 55.33% | 44.67% |
| All Japonica | 497 | 97.79% | 2.21% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 374 | 40.11% | 59.89% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 210 | 43.81% | 56.19% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0131626791 | C->T | INTERGENIC | None |