Detailed information of SNP:
|
SNP ID:
sf0131650098(Gbrowse)
Chromosome: chr01 Position: 31650098 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 93.90% | 6.10% |
| All Indica | 789 | 89.10% | 10.90% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 96.52% | 3.48% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 202 | 69.80% | 30.20% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0131650098 | G->T | INTERGENIC | None |