Detailed information of SNP:
|
SNP ID:
sf0131663680(Gbrowse)
Chromosome: chr01 Position: 31663680 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 68.78% | 31.22% |
| All Indica | 799 | 54.94% | 45.06% |
| All Japonica | 497 | 97.59% | 2.41% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 375 | 39.20% | 60.80% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 44.55% | 55.45% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0131663680 | G->A | INTERGENIC | None |