Detailed information of SNP:
|
SNP ID:
sf0131663724(Gbrowse)
Chromosome: chr01 Position: 31663724 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 51.62% | 48.38% |
| All Indica | 798 | 54.76% | 45.24% |
| All Japonica | 497 | 55.13% | 44.87% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 374 | 39.30% | 60.70% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 211 | 44.08% | 55.92% |
| Temperate Japonica | 335 | 63.28% | 36.72% |
| Tropical Japonica | 94 | 10.64% | 89.36% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0131663724 | A->G | INTERGENIC | None |