Detailed information of SNP:



SNP ID: sf0131667359(Gbrowse)

Chromosome: chr01

Position: 31667359
Major allele: G

Minor allele: A

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1418 64.81% 35.19%
All Indica798 46.74% 53.26%
All Japonica497 96.98% 3.02%
Aus67 34.33% 65.67%
Indica I375 61.87% 38.13%
Indica II213 8.45% 91.55%
Indica Intermediate210 58.57% 41.43%
Temperate Japonica335 99.70% 0.30%
Tropical Japonica94 87.23% 12.77%
Japonica Intermediate68 97.06% 2.94%
Group VI/Aromatic14 92.86% 7.14%
Intermediate42 66.67% 33.33%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0131667359 G->A INTERGENIC None