Detailed information of SNP:
SNP ID:
sf0131667359(Gbrowse)
Chromosome: chr01 Position: 31667359 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
---|---|---|---|
All | 1418 | 64.81% | 35.19% |
All Indica | 798 | 46.74% | 53.26% |
All Japonica | 497 | 96.98% | 3.02% |
Aus | 67 | 34.33% | 65.67% |
Indica I | 375 | 61.87% | 38.13% |
Indica II | 213 | 8.45% | 91.55% |
Indica Intermediate | 210 | 58.57% | 41.43% |
Temperate Japonica | 335 | 99.70% | 0.30% |
Tropical Japonica | 94 | 87.23% | 12.77% |
Japonica Intermediate | 68 | 97.06% | 2.94% |
Group VI/Aromatic | 14 | 92.86% | 7.14% |
Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0131667359 | G->A | INTERGENIC | None |