Detailed information of SNP:



SNP ID: sf0131721535(Gbrowse)

Chromosome: chr01

Position: 31721535
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1419 83.72% 16.28%
All Indica799 99.87% 0.13%
All Japonica497 58.75% 41.25%
Aus67 97.01% 2.99%
Indica I375 100.00% 0.00%
Indica II213 99.53% 0.47%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica335 65.07% 34.93%
Tropical Japonica94 21.28% 78.72%
Japonica Intermediate68 79.41% 20.59%
Group VI/Aromatic14 7.14% 92.86%
Intermediate42 76.19% 23.81%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0131721535 C->T INTERGENIC None