Detailed information of SNP:
SNP ID:
sf0131721535(Gbrowse)
Chromosome: chr01 Position: 31721535 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1419 | 83.72% | 16.28% |
All Indica | 799 | 99.87% | 0.13% |
All Japonica | 497 | 58.75% | 41.25% |
Aus | 67 | 97.01% | 2.99% |
Indica I | 375 | 100.00% | 0.00% |
Indica II | 213 | 99.53% | 0.47% |
Indica Intermediate | 211 | 100.00% | 0.00% |
Temperate Japonica | 335 | 65.07% | 34.93% |
Tropical Japonica | 94 | 21.28% | 78.72% |
Japonica Intermediate | 68 | 79.41% | 20.59% |
Group VI/Aromatic | 14 | 7.14% | 92.86% |
Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0131721535 | C->T | INTERGENIC | None |