Detailed information of SNP:
|
SNP ID:
sf0131721535(Gbrowse)
Chromosome: chr01 Position: 31721535 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 83.72% | 16.28% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 497 | 58.75% | 41.25% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 65.07% | 34.93% |
| Tropical Japonica | 94 | 21.28% | 78.72% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0131721535 | C->T | INTERGENIC | None |