Detailed information of SNP:
|
SNP ID:
sf0131753154(Gbrowse)
Chromosome: chr01 Position: 31753154 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 66.38% | 33.62% |
| All Indica | 799 | 53.44% | 46.56% |
| All Japonica | 497 | 93.76% | 6.24% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 375 | 38.93% | 61.07% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 211 | 39.81% | 60.19% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 70.21% | 29.79% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0131753154 | G->A | INTERGENIC | None |