Detailed information of SNP:
|
SNP ID:
sf0131767322(Gbrowse)
Chromosome: chr01 Position: 31767322 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 76.30% | 23.70% |
| All Indica | 798 | 67.17% | 32.83% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 375 | 43.47% | 56.53% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 76.67% | 23.33% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0131767322 | C->T | INTERGENIC | None |