Detailed information of SNP:
|
SNP ID:
sf0131767398(Gbrowse)
Chromosome: chr01 Position: 31767398 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 66.34% | 33.66% |
| All Indica | 798 | 53.88% | 46.12% |
| All Japonica | 496 | 92.94% | 7.06% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 375 | 39.20% | 60.80% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 210 | 40.48% | 59.52% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 65.96% | 34.04% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0131767398 | C->T | INTERGENIC | None |