Detailed information of SNP:
|
SNP ID:
sf0131767566(Gbrowse)
Chromosome: chr01 Position: 31767566 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 67.30% | 32.70% |
| All Indica | 797 | 55.21% | 44.79% |
| All Japonica | 496 | 92.94% | 7.06% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 374 | 40.64% | 59.36% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 210 | 43.33% | 56.67% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 65.96% | 34.04% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0131767566 | C->T | INTERGENIC | None |