Detailed information of SNP:
|
SNP ID:
sf0131768949(Gbrowse)
Chromosome: chr01 Position: 31768949 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 64.69% | 35.31% |
| All Indica | 799 | 42.80% | 57.20% |
| All Japonica | 497 | 93.96% | 6.04% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 70.40% | 29.60% |
| Indica II | 213 | 4.23% | 95.77% |
| Indica Intermediate | 211 | 32.70% | 67.30% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 70.21% | 29.79% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0131768949 | A->G | INTERGENIC | None |