Detailed information of SNP:
|
SNP ID:
sf0131773105(Gbrowse)
Chromosome: chr01 Position: 31773105 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 64.99% | 35.01% |
| All Indica | 795 | 46.92% | 53.08% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 66 | 4.55% | 95.45% |
| Indica I | 373 | 27.88% | 72.12% |
| Indica II | 212 | 90.57% | 9.43% |
| Indica Intermediate | 210 | 36.67% | 63.33% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0131773105 | C->T | INTERGENIC | None |