Detailed information of SNP:
SNP ID:
sf0131775599(Gbrowse)
Chromosome: chr01 Position: 31775599 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
---|---|---|---|
All | 1414 | 97.31% | 2.69% |
All Indica | 799 | 100.00% | 0.00% |
All Japonica | 493 | 92.90% | 7.10% |
Aus | 66 | 98.48% | 1.52% |
Indica I | 375 | 100.00% | 0.00% |
Indica II | 213 | 100.00% | 0.00% |
Indica Intermediate | 211 | 100.00% | 0.00% |
Temperate Japonica | 333 | 100.00% | 0.00% |
Tropical Japonica | 92 | 63.04% | 36.96% |
Japonica Intermediate | 68 | 98.53% | 1.47% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0131775599 | A->G | INTERGENIC | None |