Detailed information of SNP:
|
SNP ID:
sf0131777087(Gbrowse)
Chromosome: chr01 Position: 31777087 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 58.04% | 41.96% |
| All Indica | 799 | 66.33% | 33.67% |
| All Japonica | 497 | 50.70% | 49.30% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 375 | 42.93% | 57.07% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 74.41% | 25.59% |
| Temperate Japonica | 335 | 34.33% | 65.67% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 67.65% | 32.35% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0131777087 | A->G | INTERGENIC | None |