Detailed information of SNP:
|
SNP ID:
sf0131778611(Gbrowse)
Chromosome: chr01 Position: 31778611 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1384 | 84.18% | 15.82% |
| All Indica | 789 | 76.17% | 23.83% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 47 | 38.30% | 61.70% |
| Indica I | 370 | 59.73% | 40.27% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 206 | 81.55% | 18.45% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 97.30% | 2.70% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0131778611 | C->T | INTERGENIC | None |