Detailed information of SNP:



SNP ID: sf0131778611(Gbrowse)

Chromosome: chr01

Position: 31778611
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1384 84.18% 15.82%
All Indica789 76.17% 23.83%
All Japonica497 99.80% 0.20%
Aus47 38.30% 61.70%
Indica I370 59.73% 40.27%
Indica II213 99.53% 0.47%
Indica Intermediate206 81.55% 18.45%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 98.53% 1.47%
Group VI/Aromatic14 100.00% 0.00%
Intermediate37 97.30% 2.70%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0131778611 C->T INTERGENIC None