Detailed information of SNP:
|
SNP ID:
sf0131781253(Gbrowse)
Chromosome: chr01 Position: 31781253 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 55.46% | 44.54% |
| All Indica | 799 | 54.19% | 45.81% |
| All Japonica | 497 | 50.70% | 49.30% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 72.27% | 27.73% |
| Indica II | 213 | 10.33% | 89.67% |
| Indica Intermediate | 211 | 66.35% | 33.65% |
| Temperate Japonica | 335 | 34.33% | 65.67% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 69.12% | 30.88% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0131781253 | T->G | INTERGENIC | None |