Detailed information of SNP:
|
SNP ID:
sf0131803118(Gbrowse)
Chromosome: chr01 Position: 31803118 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 54.81% | 45.19% |
| All Indica | 795 | 33.84% | 66.16% |
| All Japonica | 496 | 93.75% | 6.25% |
| Aus | 67 | 32.84% | 67.16% |
| Indica I | 374 | 57.22% | 42.78% |
| Indica II | 212 | 0.94% | 99.06% |
| Indica Intermediate | 209 | 25.36% | 74.64% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 70.21% | 29.79% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0131803118 | C->T | INTERGENIC | None |