Detailed information of SNP:
|
SNP ID:
sf0131804854(Gbrowse)
Chromosome: chr01 Position: 31804854 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 54.83% | 45.17% |
| All Indica | 799 | 33.79% | 66.21% |
| All Japonica | 497 | 93.56% | 6.44% |
| Aus | 67 | 32.84% | 67.16% |
| Indica I | 375 | 57.33% | 42.67% |
| Indica II | 213 | 0.94% | 99.06% |
| Indica Intermediate | 211 | 25.12% | 74.88% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 70.21% | 29.79% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0131804854 | T->G | INTERGENIC | None |