Detailed information of SNP:
|
SNP ID:
sf0131841115(Gbrowse)
Chromosome: chr01 Position: 31841115 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 51.13% | 48.87% |
| All Indica | 797 | 29.61% | 70.39% |
| All Japonica | 497 | 93.16% | 6.84% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 375 | 56.00% | 44.00% |
| Indica II | 213 | 0.47% | 99.53% |
| Indica Intermediate | 209 | 11.96% | 88.04% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 69.15% | 30.85% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 41.46% | 58.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0131841115 | T->G | INTERGENIC | None |