Detailed information of SNP:
|
SNP ID:
sf0131844686(Gbrowse)
Chromosome: chr01 Position: 31844686 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 67.79% | 32.21% |
| All Indica | 799 | 56.32% | 43.68% |
| All Japonica | 497 | 93.56% | 6.44% |
| Aus | 67 | 37.31% | 62.69% |
| Indica I | 375 | 75.47% | 24.53% |
| Indica II | 213 | 10.33% | 89.67% |
| Indica Intermediate | 211 | 68.72% | 31.28% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 70.21% | 29.79% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0131844686 | G->A | INTERGENIC | None |