Detailed information of SNP:
|
SNP ID:
sf0131886593(Gbrowse)
Chromosome: chr01 Position: 31886593 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 67.58% | 32.42% |
| All Indica | 799 | 56.57% | 43.43% |
| All Japonica | 497 | 84.31% | 15.69% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 75.20% | 24.80% |
| Indica II | 213 | 10.80% | 89.20% |
| Indica Intermediate | 211 | 69.67% | 30.33% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 22.34% | 77.66% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0131886593 | G->C | INTERGENIC | None |