Detailed information of SNP:
|
SNP ID:
sf0131895791(Gbrowse)
Chromosome: chr01 Position: 31895791 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 65.14% | 34.86% |
| All Indica | 798 | 56.02% | 43.98% |
| All Japonica | 497 | 84.10% | 15.90% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 375 | 74.67% | 25.33% |
| Indica II | 213 | 10.33% | 89.67% |
| Indica Intermediate | 210 | 69.05% | 30.95% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 22.34% | 77.66% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 41.46% | 58.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0131895791 | C->T | INTERGENIC | None |