Detailed information of SNP:
|
SNP ID:
sf0131937004(Gbrowse)
Chromosome: chr01 Position: 31937004 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1358 | 92.12% | 7.88% |
| All Indica | 742 | 86.39% | 13.61% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 64 | 92.19% | 7.81% |
| Indica I | 321 | 72.27% | 27.73% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 208 | 94.23% | 5.77% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0131937004 | G->A | INTERGENIC | None |