Detailed information of SNP:
|
SNP ID:
sf0131939357(Gbrowse)
Chromosome: chr01 Position: 31939357 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1383 | 70.21% | 29.79% |
| All Indica | 778 | 59.64% | 40.36% |
| All Japonica | 486 | 85.80% | 14.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 369 | 78.59% | 21.41% |
| Indica II | 202 | 13.86% | 86.14% |
| Indica Intermediate | 207 | 70.53% | 29.47% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 83 | 24.10% | 75.90% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 13 | 7.69% | 92.31% |
| Intermediate | 39 | 56.41% | 43.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0131939357 | C->T | INTERGENIC | None |