Detailed information of SNP:
|
SNP ID:
sf0131941020(Gbrowse)
Chromosome: chr01 Position: 31941020 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 58.39% | 41.61% |
| All Indica | 798 | 47.12% | 52.88% |
| All Japonica | 497 | 82.70% | 17.30% |
| Aus | 67 | 37.31% | 62.69% |
| Indica I | 374 | 61.50% | 38.50% |
| Indica II | 213 | 7.04% | 92.96% |
| Indica Intermediate | 211 | 62.09% | 37.91% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 15.96% | 84.04% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0131941020 | G->T | INTERGENIC | None |