Detailed information of SNP:
|
SNP ID:
sf0131951586(Gbrowse)
Chromosome: chr01 Position: 31951586 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 85.68% | 14.32% |
| All Indica | 798 | 82.71% | 17.29% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 375 | 94.13% | 5.87% |
| Indica II | 212 | 93.87% | 6.13% |
| Indica Intermediate | 211 | 51.18% | 48.82% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0131951586 | G->A | INTERGENIC | None |