Detailed information of SNP:
|
SNP ID:
sf0131954750(Gbrowse)
Chromosome: chr01 Position: 31954750 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1404 | 92.17% | 7.83% |
| All Indica | 784 | 86.10% | 13.90% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 373 | 94.91% | 5.09% |
| Indica II | 212 | 92.92% | 7.08% |
| Indica Intermediate | 199 | 62.31% | 37.69% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0131954750 | G->A | INTERGENIC | None |