Detailed information of SNP:
|
SNP ID:
sf0131956058(Gbrowse)
Chromosome: chr01 Position: 31956058 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1359 | 77.41% | 22.59% |
| All Indica | 755 | 69.93% | 30.07% |
| All Japonica | 486 | 88.48% | 11.52% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 360 | 85.00% | 15.00% |
| Indica II | 188 | 30.85% | 69.15% |
| Indica Intermediate | 207 | 79.23% | 20.77% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 86 | 38.37% | 61.63% |
| Japonica Intermediate | 66 | 95.45% | 4.55% |
| Group VI/Aromatic | 13 | 23.08% | 76.92% |
| Intermediate | 38 | 63.16% | 36.84% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0131956058 | G->A | INTERGENIC | None |