Detailed information of SNP:
|
SNP ID:
sf0131963480(Gbrowse)
Chromosome: chr01 Position: 31963480 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1386 | 50.43% | 49.57% |
| All Indica | 792 | 37.63% | 62.37% |
| All Japonica | 475 | 78.74% | 21.26% |
| Aus | 65 | 18.46% | 81.54% |
| Indica I | 374 | 62.30% | 37.70% |
| Indica II | 212 | 6.60% | 93.40% |
| Indica Intermediate | 206 | 24.76% | 75.24% |
| Temperate Japonica | 325 | 99.08% | 0.92% |
| Tropical Japonica | 92 | 20.65% | 79.35% |
| Japonica Intermediate | 58 | 56.90% | 43.10% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 37.50% | 62.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0131963480 | T->C | LOC_Os01g55480(LOC_Os01g55480.1) | Synonymous |