Detailed information of SNP:
|
SNP ID:
sf0131971077(Gbrowse)
Chromosome: chr01 Position: 31971077 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1348 | 50.37% | 49.63% |
| All Indica | 730 | 33.70% | 66.30% |
| All Japonica | 497 | 82.90% | 17.10% |
| Aus | 66 | 12.12% | 87.88% |
| Indica I | 325 | 64.62% | 35.38% |
| Indica II | 209 | 1.91% | 98.09% |
| Indica Intermediate | 196 | 16.33% | 83.67% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 17.02% | 82.98% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 31.71% | 68.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0131971077 | G->A | LOC_Os01g55490(LOC_Os01g55490.1) | INTRON |
| sf0131971077 | G->A | LOC_Os01g55490(LOC_Os01g55490.4) | INTRON |
| sf0131971077 | G->A | LOC_Os01g55490(LOC_Os01g55490.2) | INTRON |
| sf0131971077 | G->A | LOC_Os01g55490(LOC_Os01g55490.3) | INTRON |