Detailed information of SNP:
|
SNP ID:
sf0131985769(Gbrowse)
Chromosome: chr01 Position: 31985769 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 68.34% | 31.66% |
| All Indica | 799 | 53.19% | 46.81% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 38.40% | 61.60% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 39.34% | 60.66% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0131985769 | G->A | LOC_Os01g55520(LOC_Os01g55520.1) | INTRON |