Detailed information of SNP:
|
SNP ID:
sf0132002842(Gbrowse)
Chromosome: chr01 Position: 32002842 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 71.35% | 28.65% |
| All Indica | 798 | 61.15% | 38.85% |
| All Japonica | 497 | 89.94% | 10.06% |
| Aus | 67 | 46.27% | 53.73% |
| Indica I | 375 | 30.93% | 69.07% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 210 | 78.57% | 21.43% |
| Temperate Japonica | 335 | 96.12% | 3.88% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 51.47% | 48.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0132002842 | T->A | INTERGENIC | None |