Detailed information of SNP:
|
SNP ID:
sf0132004048(Gbrowse)
Chromosome: chr01 Position: 32004048 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 59.89% | 40.11% |
| All Indica | 798 | 44.61% | 55.39% |
| All Japonica | 497 | 89.54% | 10.46% |
| Aus | 65 | 6.15% | 93.85% |
| Indica I | 374 | 25.40% | 74.60% |
| Indica II | 213 | 90.14% | 9.86% |
| Indica Intermediate | 211 | 32.70% | 67.30% |
| Temperate Japonica | 335 | 96.12% | 3.88% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 50.00% | 50.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0132004048 | T->C | INTERGENIC | None |