Detailed information of SNP:
|
SNP ID:
sf0132004772(Gbrowse)
Chromosome: chr01 Position: 32004772 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 75.65% | 24.35% |
| All Indica | 798 | 69.30% | 30.70% |
| All Japonica | 497 | 89.34% | 10.66% |
| Aus | 67 | 46.27% | 53.73% |
| Indica I | 374 | 43.85% | 56.15% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 83.89% | 16.11% |
| Temperate Japonica | 335 | 96.12% | 3.88% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 50.00% | 50.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0132004772 | A->G | INTERGENIC | None |