Detailed information of SNP:
|
SNP ID:
sf0132024188(Gbrowse)
Chromosome: chr01 Position: 32024188 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 74.31% | 25.69% |
| All Indica | 798 | 58.52% | 41.48% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 64.18% | 35.82% |
| Indica I | 375 | 30.40% | 69.60% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 210 | 69.52% | 30.48% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0132024188 | C->T | INTERGENIC | None |