Detailed information of SNP:
|
SNP ID:
sf0132024631(Gbrowse)
Chromosome: chr01 Position: 32024631 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1339 | 71.99% | 28.01% |
| All Indica | 729 | 49.93% | 50.07% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 58 | 84.48% | 15.52% |
| Indica I | 324 | 30.56% | 69.44% |
| Indica II | 207 | 92.75% | 7.25% |
| Indica Intermediate | 198 | 36.87% | 63.13% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0132024631 | C->T | INTERGENIC | None |