Detailed information of SNP:
|
SNP ID:
sf0132044752(Gbrowse)
Chromosome: chr01 Position: 32044752 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 59.91% | 40.09% |
| All Indica | 790 | 46.96% | 53.04% |
| All Japonica | 494 | 83.60% | 16.40% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 373 | 71.85% | 28.15% |
| Indica II | 210 | 11.43% | 88.57% |
| Indica Intermediate | 207 | 38.16% | 61.84% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 18.48% | 81.52% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0132044752 | C->T | INTERGENIC | None |