Detailed information of SNP:
|
SNP ID:
sf0132044986(Gbrowse)
Chromosome: chr01 Position: 32044986 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 57.88% | 42.12% |
| All Indica | 795 | 43.65% | 56.35% |
| All Japonica | 497 | 82.90% | 17.10% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 373 | 71.31% | 28.69% |
| Indica II | 213 | 3.76% | 96.24% |
| Indica Intermediate | 209 | 34.93% | 65.07% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 17.02% | 82.98% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0132044986 | G->A | INTERGENIC | None |