Detailed information of SNP:
|
SNP ID:
sf0132045428(Gbrowse)
Chromosome: chr01 Position: 32045428 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1400 | 63.79% | 36.21% |
| All Indica | 780 | 52.44% | 47.56% |
| All Japonica | 497 | 84.10% | 15.90% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 370 | 76.49% | 23.51% |
| Indica II | 202 | 19.80% | 80.20% |
| Indica Intermediate | 208 | 41.35% | 58.65% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 22.34% | 77.66% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0132045428 | C->T | INTERGENIC | None |